Contradiction with Psalm 51:11
This verse implores God not to take His Holy Spirit away, implying His spirit can be withdrawn, while Ezekiel 39:29 suggests His Spirit will not be hidden anymore.
Psalm 51:11: Cast me not away from thy presence; and take not thy holy spirit from me.
Contradiction with 1 Samuel 16:14
Here, the Spirit of the Lord departs from Saul, implying the possibility of His Spirit being taken away, contradicting the assurance in Ezekiel 39:29.
1 Samuel 16:14: But the Spirit of the LORD departed from Saul, and an evil spirit from the LORD troubled him. [troubled: or, terrified]
Contradiction with Judges 16:20
Samson does not realize that the Lord has left him, suggesting God's Spirit can indeed depart from someone, opposing the certainty of His presence in Ezekiel 39:29.
Judges 16:20: And she said, The Philistines [be] upon thee, Samson. And he awoke out of his sleep, and said, I will go out as at other times before, and shake myself. And he wist not that the LORD was departed from him.
Contradiction with John 7:39
The verse states that the Holy Spirit was not yet given because Jesus was not yet glorified, contradicting Ezekiel 39:29 where God's Spirit is referenced in a historical context.
John 7:39: (But this spake he of the Spirit, which they that believe on him should receive: for the Holy Ghost was not yet [given]; because that Jesus was not yet glorified.)
Contradiction with Genesis 6:3
God declares that His Spirit shall not always strive with man, implying a withdrawal of His Spirit, which conflicts with the permanency expressed in Ezekiel 39:29.
Genesis 6:3: And the LORD said, My spirit shall not always strive with man, for that he also [is] flesh: yet his days shall be an hundred and twenty years.