Contradiction with 1 Kings 5:5
Ezra 6:7 speaks of allowing the temple to be built, while 1 Kings 5:5 describes Solomon's construction of the temple as a unique divine promise to David, which could imply no further temples should be commissioned.
1 Kings 5:5: And, behold, I purpose to build an house unto the name of the LORD my God, as the LORD spake unto David my father, saying, Thy son, whom I will set upon thy throne in thy room, he shall build an house unto my name. [purpose: Heb. say]
Contradiction with 2 Samuel 7:13
Ezra 6:7 permits the rebuilding of the temple, whereas 2 Samuel 7:13 suggests that Solomon is the one chosen to build the house for God's name forever, potentially precluding further constructions.
2 Samuel 7:13: He shall build an house for my name, and I will stablish the throne of his kingdom for ever.
Contradiction with Jeremiah 22:30
Ezra 6:7 supports the rebuilding efforts, but Jeremiah 22:30 pronounces no descendants of Jehoiachin (Jeconiah) shall prosper sitting on David's throne, challenging continuity in the temple-associated leadership.
Jeremiah 22:30: Thus saith the LORD, Write ye this man childless, a man [that] shall not prosper in his days: for no man of his seed shall prosper, sitting upon the throne of David, and ruling any more in Judah.
Contradiction with Hebrews 9:8-10
Ezra 6:7 allows the building of a physical temple, yet Hebrews 9:8-10 indicates such structures as symbolic and temporal, suggesting a move away from physical temples to spiritual truth.
Hebrews 9:8-10: The Holy Ghost this signifying, that the way into the holiest of all was not yet made manifest, while as the first tabernacle was yet standing: