Contradiction with Genesis 1:4
Genesis 1:4 describes God separating light from darkness, suggesting a distinction that Job 38:9's imagery of darkness covering the sea contradicts.
Genesis 1:4: And God saw the light, that [it was] good: and God divided the light from the darkness. [the light from...: Heb. between the light and between the darkness]
Contradiction with Isaiah 45:7
Isaiah 45:7 asserts that God creates darkness and calamity, presenting a different aspect compared to Job 38:9, which describes God setting limits on the sea with a cloud of darkness.
Isaiah 45:7: I form the light, and create darkness: I make peace, and create evil: I the LORD do all these [things].
Contradiction with John 1:5
John 1:5 emphasizes light shining in darkness and not being comprehended by it, contrasting with the darkness enwrapping the sea in Job 38:9.
John 1:5: And the light shineth in darkness; and the darkness comprehended it not. [comprehended: or, did not admit, or, receive]