Contradiction with Exodus 20:8
This verse commands to keep the Sabbath day holy, while John 5:9 describes a man carrying his bed on the Sabbath, which was considered work.
Exodus 20:8: Remember the sabbath day, to keep it holy.
Contradiction with Nehemiah 13:19
This verse shows Nehemiah enforcing the prohibition of work on the Sabbath, contradicting with John 5:9 where carrying the bed occurs on the Sabbath.
Nehemiah 13:19: And it came to pass, that when the gates of Jerusalem began to be dark before the sabbath, I commanded that the gates should be shut, and charged that they should not be opened till after the sabbath: and [some] of my servants set I at the gates, [that] there should no burden be brought in on the sabbath day.
Contradiction with Jeremiah 17:21-22
These verses instruct not to carry burdens on the Sabbath, in contrast to John 5:9 where a man is carrying his bed.
Jeremiah 17:21-22: Thus saith the LORD; Take heed to yourselves, and bear no burden on the sabbath day, nor bring [it] in by the gates of Jerusalem;
Contradiction with Matthew 12:12
Jesus states that it is lawful to do well on the Sabbath, while John 5:9 shows controversy as a man is healed and carries his bed on the Sabbath.
Matthew 12:12: How much then is a man better than a sheep? Wherefore it is lawful to do well on the sabbath days.
Contradiction with Mark 3:4
This verse questions if one should do good or evil on the Sabbath, creating a discussion similar to John 5:9 about Sabbath observance.
Mark 3:4: And he saith unto them, Is it lawful to do good on the sabbath days, or to do evil? to save life, or to kill? But they held their peace.