Contradiction with John 9:31
Judges 3:9 suggests God hears the cries of His people and provides deliverance, whereas John 9:31 implies God does not hear sinners.
John 9:31: Now we know that God heareth not sinners: but if any man be a worshipper of God, and doeth his will, him he heareth.
Contradiction with Proverbs 28:9
Judges 3:9 indicates God’s responsiveness to His people's pleas for help. Proverbs 28:9 suggests that those who turn away from the law have even their prayers considered abominable.
Proverbs 28:9: He that turneth away his ear from hearing the law, even his prayer [shall be] abomination.
Contradiction with 1 Samuel 8:18
Judges 3:9 shows God delivering Israel when they cried out, but 1 Samuel 8:18 suggests God will not hear them in times of trouble due to choosing a king over God’s direct rule.
1 Samuel 8:18: And ye shall cry out in that day because of your king which ye shall have chosen you; and the LORD will not hear you in that day.