Contradiction with Genesis 9:11
Luke 17:27 mentions the destruction of all, whereas Genesis 9:11 states that no flood will again destroy all flesh.
Genesis 9:11: And I will establish my covenant with you; neither shall all flesh be cut off any more by the waters of a flood; neither shall there any more be a flood to destroy the earth.
Contradiction with 2 Peter 3:7
Luke 17:27 speaks of destruction by flood, while 2 Peter 3:7 refers to a future destruction by fire.
2 Peter 3:7: But the heavens and the earth, which are now, by the same word are kept in store, reserved unto fire against the day of judgment and perdition of ungodly men.
Contradiction with Isaiah 54:9
Luke 17:27 describes total destruction by flood, but Isaiah 54:9 promises that God would not cover the earth with water again.
Isaiah 54:9: For this [is as] the waters of Noah unto me: for [as] I have sworn that the waters of Noah should no more go over the earth; so have I sworn that I would not be wroth with thee, nor rebuke thee.
Contradiction with Amos 9:8
Luke 17:27 suggests entire destruction, whereas Amos 9:8 states that God will not utterly destroy the house of Jacob.
Amos 9:8: Behold, the eyes of the Lord GOD [are] upon the sinful kingdom, and I will destroy it from off the face of the earth; saving that I will not utterly destroy the house of Jacob, saith the LORD.